Patrik Edén
Publications at division for computational biology and biological physics.
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U. Axelsson, J. Månsson, P. Johnsson, C. Borrebaeck, L. Rydén, P. Edén, and I. Rahm Hallberg
A scoping review exploring psychological resilience in relation to
various biomolecular variables
Biomedical Journal of Scientific & Technical Research 23
DOI: 10.26717/BJSTR.2019.23.003960
[Abstract]
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L. Dihge, M. Ohlsson, P. Edén, P-O. Bendahl, L. Rydén,
Artificial Neural Network Models to Predict Nodal Status in Clinically Node-negative Breast Cancer
BMC Cancer 19, 610 (2019)
[Abstract]
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U. Axelsson, L. Rydén, P. Johnsson, P. Edén, J. Månsson, I. Rahm Hallberg and C. Borrebaeck
A Multicenter Study Investigating the Molecular Fingerprint of Psychological Resilience in Breast Cancer Patients: Study Protocol of the SCAN-B Resilience Study
BMC Cancer 18, 789 (2018)
[Abstract]
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J. Kalderstam, P. Edén and M. Ohlsson
Identification and Validation of Single-sample Breast Cancer Radiosensitivity Gene Expression Predictors
Breast Cancer Research 20(1), 64 (2018)
[Abstract]
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N. Abiri, B. Linse, P. Edén and M. Ohlsson
Establishing strong imputation performance of a denoising autoencoder in a wide range of missing data problems
Neurocomputing 365, (2019)
[Abstract]
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M. Sjöström, J. Staaf, P. Edén, F. Wärnberg, J. Bergh, P. Malmström, M. Fernö, E. Niméus and I. Fredriksson
Identification and validation of single-sample breast cancer radiosensitivity gene expression predictors
Breast Cancer Research 20(1), (2018)
[doi 10.1186/s13058-018-0978-y]
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J. Kalderstam, P. Edén and M. Ohlsson
Finding Risk Groups by Optimizing Artificial Neural Networks on the Area under the Survival Curve Using Genetic Algorithms
PLoS ONE 10(9), 3e0137597 (2015)
[Abstract]
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C. Pina, J. Teles, C. Fugazza, G. May, D. Wang, Y. Guo, S. Soneji, J. Brown, P. Edén, M. Ohlsson, C. Peterson and T. Enver
Single-Cell Network Analysis Identifies DDIT3 as a Nodal
Lineage Regulator in Hematopoiesis
Cell Reports 11(10), 1503-1510 (2015)
[Abstract]
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L. Nordström, S. Sernbo, P. Edén, K. Grønbæk, A. Kolstad, R. Räty, M-L. Karjalainen, C. Geisler, E. Ralfkiær, C. Sundström, A. Laurell, J. Delabie, M. Ehinger, M. Jerkeman and S. Ek
SOX11 and p53 add prognostic information to MIPI in a homogenously treated cohort of mantle cell lymphoma - a Nordic Lymphoma Group study
British Journal of Haematology. 166(1), 98-108 (2014)
[Abstract]
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J. Teles, C. Pina, P. Edén, M. Ohlsson, T. Enver and C. Peterson
Transcriptional Regulation of Lineage Commitment - A Stochastic Model of Cell Fate Decisions
PLoS Comput Biol. 9(8) (2013)
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J. Kalderstam, P. Edén and M. Ohlsson
Ensembles of Genetically Trained Artificial Neural Networks for Survival Analysis
ESANN 2013 proceedings, 21st European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning. 333-338 (2013)
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J. Kalderstam, P. Edén, P-O. Bendahl, C. Strand, M. Fernö and M. Ohlsson
Training artificial neural networks directly on the concordance index for censored data using genetic algorithms
Artificial Intelligence in Medicine, http://dx.doi.org/10.1016/j.artmed.2013.03.001, (2013)
[Abstract]
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K. Rydström, P. Joost, M. Ehinger, P. Edén, M. Jerkeman, E. Cavallin-Ståhl and J. Linderoth
Gene expression profiling indicates that immunohistochemical expression of CD40 is a marker of an inflammatory reaction in the tumor stroma of diffuse large B-cell lymphoma
Leuk Lymphoma 53, 1764-1768 (2012)
[Abstract]
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A. Andersson, P. Edén, T. Olofsson and T. Fioretos
Gene expression signatures in childhood acute leukemias are largely unique and distinct from those of normal tissues and other malignancies
BMC Med Genomics 3, 6 (2010)
[Abstract]
- U. Andréasson, P. Edén, C. Peterson, C-M. Högerkorp, M. Jerkeman, N. Andersen, M. Berglund, C. Sundström, R. Rosenquist, C.A.K. Borrebaeck and S. Ek
Identification of uniquely expressed transcription factors in highly purified B-cell lymphoma samples
American Journal of Hematology 85:418-425 (2010)
[Abstract]
- M. Järås, P. Johnels, H. Ågerstam, C. Lassen, M. Rissler, P. Edén, J. Cammenga, T. Olofsson, O.W. Bjerrum, J. Richter, X. Fan and T. Fioretos
Expression of P190 and P210 BCR/ABL1 in normal human CD34(+) cells induces similar gene expression profiles and results in a STAT5-dependent expansion of the erythroid lineage
Experimental Hematology 37:367-375 (2009)
[Abstract]
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C. Ritz and P. Edén
Accounting for one-channel depletion improves missing value imputation in 2-dye microarray data
BMC Genomics 19:25 (2008)
[Abstract]
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J. Linderoth, P. Edén, M. Ehinger, J. Valcich, M. Jerkeman,
P.-O. Bendahl, M. Berglund, G. Enblad, M. Erlanson, G. Roos and E. Cavallin-Ståhl
Genes associatied with the tumor microenvironment are differentially
expressed in cured versus primary chemotherapy-refractory diffuse large B-cell lymphoma
British Journal of Haematology 141:423-432 (2008)
[Abstract]
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L. Nilsson, P. Edén, E. Olsson, R. Månsson, I. Åstrand-Grundström, B. Strömbeck, K. Theilgaard-Moench, K. Anderson, R. Hast, E. Hellström-Lindberg, J. Samuelsson, G. Bergh, C. Nerlov, B. Johansson, M. Sigvardsson, Å Borg and S.E. Jacobsen
The molecular signature of MDS stem cells supports a stem cell origin of 5q- myelodysplastic syndromes
Blood 110, 3005-3014 (2007)
[Abstract]
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P. Francis, H.M. Namløs, C. Müller, P. Edén, J. Fernebro,
J.-M. Berner, B. Bjerkehagen, M. Åkerman, P.-O. Bendahl, A. Isinger,
A. Rydholm, O.Myklebost and M. Nilbert
Diagnostic and prognostic gene expression signatures in 177 soft tissue
sarcomas: hypoxia-induced transcription profile signifies metastatic potential
BMC Genomics 8, 73 (2007)
[Abstract]
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P.R. Painter, P. Edén and H.-U. Bengtsson
Pulsatile blood flow, shear force, energy dissipation and Murray's Law
Theoretical Biology and Medical Modelling 3, 31 (2006)
[Abstract]
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A. Andersson, C. Ritz, D. Lindgren, P. Edén, C. Lassen, J. Heldrup, T. Olofsson, J. Råde, M. Fontes, A. Porwit-McDonald, M. Behrendtz, M. Höglund, B. Johansson and T. Fioretos
Microarray-based classification of a consecutive series of 121 childhood acute leukemias: prediction of leukemic and genetic subtype as well as of minimal residual disease status
Leukemia 21, 1198-1203 (2007)
[Abstract]
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A. Andersson, T. Olofsson, D. Lindgren, B. Nilsson, C. Ritz, P. Edén, C. Lassen, J. Råde, M. Fontes, H. Mörse, J. Heldrup, M. Behrendtz, F. Mitelman, M. Höglund, B. Johansson and T. Fioretos
Molecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations
PNAS 102, 19069-19074 (2005)
[Abstract]
- S.K. Gruvberger-Saal, P-O. Bendahl, L.H. Saal, M. Laakso, P. Edén, C. Peterson, P. Malmström, J. Isola, Å. Borg and M. Fernö
Estrogen Receptor (ER) beta Expression is Associated with Tamoxifen
Response in ER alpha-negative breast carcinoma
Clinical Cancer Research 13,1987-1994 (2007)
[Abstract]
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E. Niméus-Malmström, C. Ritz, P. Edén, A. Johnsson, C. Strand, G. Östberg, M. Fernö and C. Peterson
Gene expression profilers and conventional clinical markers to predict distant recurrences for premenopausal breast cancer patients after adjuvant chemotherapy (CMF)
European Journal of Cancer 42, 2729-2737 (2006)
[Abstract][Abstract at journal]
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J. Fernebro, P. Francis, P. Edén, Å. Borg, I. Panagopoulos, F. Mertens, J. Vallon-Christersson, M. Åkerman, N. Mandahl and M. Nilbert
Gene expression profiles relate to SS18/SSX fusion type and development of metastasis in synovial sarcoma
Int J Cancer 118, 1165-1172 (2006)
[Abstract][html]
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P. Francis, J. Fernebro, P. Edén, A. Laurell, A. Rydholm, H.A. Domanski, T. Breslin, C. Hegardt, Å. Borg and M. Nilbert
Intratumor versus intertumor heterogeneity in gene expression profiles from soft tissue sarcoma
Genes Chromosomes Cancer 3, 302-308 (2005)
[Abstract]
[PDF at journal]
[HTML at journal]
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A. Andersson, P. Edén, D. Lindgren, J. Nilsson, C. Lassen, J. Heldrup, M. Fontes, Å. Borg, F. Mittelman, B. Johansson, M. Höglund and T. Fioretos
Gene expression profiling of leukemic cell lines reveals conserved molecular signatures among subtypes with specific genetic aberrations
Leukemia 19, 1042-1050 (2005)
[Abstract]
[PDF at journal]
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T. Breslin, P. Edén and M. Krogh
Comparing functional annotation analyses with catmap
BMC Bioinformatics 5, 193 (2004)
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P. Edén, C. Ritz, C. Rose, M. Fernö and C. Peterson
''Good old'' clinical markers have similar power in breast cancer
prognosis as microarray gene expression profilers
European Journal of Cancer 40, 1837-1841 (2004)
[Abstract]
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S.K. Gruvberger-Saal, P. Edén, M. Ringnér, B. Baldetorp, G. Chebil, Å. Borg, M. Fernö, C. Peterson and P.S. Meltzer
Predicting continuous values of prognostic markers in breast cancer from microarray gene expression profiles
molecular cancer therapeutics 3, 161-168 (2004)
[Abstract ]
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H.-U. Bengtsson and P. Edén
A simple model for the arterial system
Journal of Theoretical Biology 221, 437-443 (2003)
[Abstract]
[PDF]
- S.K. Gruvberger, M. Ringnér, P. Edén,
Å. Borg, M. Fernö, C. Peterson and P.S. Meltzer
Expression profiling to predict outcome in breast cancer: the
influence of sample selection
Breast Cancer Research 5, 23-26 (2003)
[Abstract]
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- M. Ringnér, P. Edén and P. Johansson
Classification of expression patterns using artificial neural
networks
In A Practical Approach to Microarray Data Analysis,
eds. D.P. Berrar, W. Dubitzky and M. Granzow, 201-215 (Kluwer Academic
Publishers, 2002)
[Abstract]
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