Here is a list of all documented files with brief descriptions:
[detail level 123]
  yat | |
   classifier | |
   BootstrapSampler.h | |
| ConsensusInputRanker.h | |
| CrossValidationSampler.h | |
| DataLookup1D.h | |
| DataLookupWeighted1D.h | |
| EnsembleBuilder.h | |
| FeatureSelector.h | |
| FeatureSelectorIR.h | |
| FeatureSelectorRandom.h | |
| GaussianKernelFunction.h | |
| IGP.h | |
| InputRanker.h | |
| IRRank.h | |
| IRRetrieve.h | |
| Kernel.h | |
| Kernel_MEV.h | |
| Kernel_SEV.h | |
| KernelFunction.h | |
| KernelLookup.h | |
| KNN.h | |
| KNN_ReciprocalDistance.h | |
| KNN_ReciprocalRank.h | |
| KNN_Uniform.h | |
| MatrixLookup.h | |
| MatrixLookupWeighted.h | |
| NBC.h | |
| NCC.h | |
| PolynomialKernelFunction.h | |
| Sampler.h | |
| SubsetGenerator.h | |
| SupervisedClassifier.h | |
| SVindex.h | |
| SVM.h | |
| SvmMultiClass.h | |
| Target.h | |
 utility.h | |
| normalizer | |
| Centralizer.h | |
| ColumnNormalizer.h | |
| Gauss.h | |
| qQuantileNormalizer.h | |
| QuantileNormalizer.h | |
| RowNormalizer.h | |
| Spearman.h | |
| utility.h | |
| Zscore.h | |
| omic | |
| algorithm.h | |
| BamFile.h | |
| BamHeader.h | |
| BamPair.h | |
| BamPairIterator.h | |
| BamRead.h | |
| BamReadFilter.h | |
| BamReadIterator.h | |
| BamWriteIterator.h | |
| Codon.h | |
| config_bam.h | |
| DNA.h | |
| DnaComplementer.h | |
| Fasta.h | |
| GenomicPosition.h | |
| GFF.h | |
| GFF2.h | |
| GFF3.h | |
| phred.h | |
| Pileup.h | |
| random | |
| copy_k_of_n.h | |
| random.h | |
| regression | |
| AkimaInterpolation.h | |
| AkimaPeriodicInterpolation.h | |
| CSplineInterpolation.h | |
| CSplinePeriodicInterpolation.h | |
| GSLInterpolation.h | |
| Kernel.h | |
| KernelBox.h | |
| KernelTriCube.h | |
| Linear.h | |
| LinearInterpolation.h | |
| LinearWeighted.h | |
| Local.h | |
| MultiDimensional.h | |
| MultiDimensionalWeighted.h | |
| Naive.h | |
| NaiveWeighted.h | |
| OneDimensional.h | |
| OneDimensionalWeighted.h | |
| Polynomial.h | |
| PolynomialInterpolation.h | |
| PolynomialWeighted.h | |
| TukeyBiweight.h | |
| statistics | |
| AUC.h | |
| Average.h | |
| Averager.h | |
| Averager1.h | |
| Averager3.h | |
| Averager4.h | |
| averager_base.h | |
| averager_traits.h | |
| AveragerPair.h | |
| AveragerPairWeighted.h | |
| AveragerWeighted.h | |
| Distance.h | |
| EuclideanDistance.h | |
| Fisher.h | |
| FoldChange.h | |
| Histogram.h | |
| Kendall.h | |
| KolmogorovSmirnov.h | |
| KolmogorovSmirnovOneSample.h | |
| LikelihoodRatioTestBinomial.h | |
| Pearson.h | |
| PearsonCorrelation.h | |
| PearsonDistance.h | |
| Percentiler.h | |
| ROC.h | |
| SAMScore.h | |
| Score.h | |
| Smoother.h | |
| SNRScore.h | |
| Spearman.h | |
| tScore.h | |
| tTest.h | |
| TukeyBiweightEstimator.h | |
| utility.h | |
| VectorFunction.h | |
| WilcoxonFoldChange.h | |
 utility | |
| Aligner.h | |
| Alignment.h | |
| boost_exception_ptr.h | |
| Cigar.h | |
| CigarIterator.h | |
| ColumnStream.h | |
| CommandLine.h | |
| concept_check.h | |
| config_public.h | |
| Container2DIterator.h | |
| DataIterator.h | |
| DataWeight.h | |
| DataWeightProxy.h | |
| Deleter.h | |
| deprecate.h | |
| Exception.h | |
| FileUtil.h | |
| GetlineIterator.h | |
| Index.h | |
| iterator_traits.h | |
| KernelMatrix.h | |
| KernelPCA.h | |
| kNNI.h | |
| Matrix.h | |
| MatrixWeighted.h | |
| merge.h | |
| MergeIterator.h | |
| NNI.h | |
| Option.h | |
| OptionArg.h | |
| OptionFile.h | |
| OptionHelp.h | |
| OptionInFile.h | |
| OptionOutFile.h | |
| OptionSwitch.h | |
| OstreamIterator.h | |
| PCA.h | |
| PriorityQueue.h | |
| Queue.h | |
| Range.h | |
| Scheduler.h | |
| Segment.h | |
| SegmentMap.h | |
| SegmentSet.h | |
| SegmentTree.h | |
| SmartPtr.h | |
| SmithWaterman.h | |
| sort_index.h | |
| split.h | |
| stl_utility.h | |
| StreamRedirect.h | |
| StrideIterator.h | |
| SVD.h | |
| TypeInfo.h | |
| utility.h | Some useful functions are placed here |
| Vector.h | |
| VectorBase.h | |
| VectorConstView.h | |
| VectorMutable.h | |
| VectorView.h | |
| version.h | |
| WeightedIterator.h | |
| WeightedIteratorArchetype.h | |
| WeightIterator.h | |
| WeNNI.h | |
| yat_assert.h |
