BamRegion.h

#ifndef theplu_yat_omic_bam_region_
#define theplu_yat_omic_bam_region_

// $Id: BamRegion.h 4272 2023-01-24 14:51:24Z peter $

/*
  Copyright (C) 2023 Peter Johansson

  This file is part of the yat library, https://dev.thep.lu.se/yat

  The yat library is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License as
  published by the Free Software Foundation; either version 3 of the
  License, or (at your option) any later version.

  The yat library is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with yat. If not, see <https://www.gnu.org/licenses/>.
*/

#include <htslib/hts.h>

namespace theplu {
namespace yat {
namespace omic {

  class BamRegion
  {
  public:
    BamRegion(void) = default;

    explicit BamRegion(int tid, hts_pos_t begin=0, hts_pos_t end=HTS_POS_MAX);

    int& tid(void);

    const int& tid(void) const;

    hts_pos_t& begin(void);

    const hts_pos_t& begin(void) const;

    hts_pos_t& end(void);

    const hts_pos_t& end(void) const;
  private:
    int tid_;
    hts_pos_t begin_;
    hts_pos_t end_;
  };

}}}
#endif