theplu::yat::omic::BamRegion Class Reference

#include <yat/omic/BamRegion.h>

Public Member Functions
	BamRegion (void)=default
	default constructor
	BamRegion (int tid, hts_pos_t begin=0, hts_pos_t end=HTS_POS_MAX)
	Constructor.
int &	tid (void)
const int &	tid (void) const
hts_pos_t &	begin (void)
const hts_pos_t &	begin (void) const
hts_pos_t &	end (void)
const hts_pos_t &	end (void) const

Detailed Description

Class holds a region as defined by tid (chromosome), begin and end coordinates. The region is 0-based, which means it is semi open such that begin is included and end is not.

Since

New in yat 0.21

Member Function Documentation

begin() [1/2]

hts_pos_t& theplu::yat::omic::BamRegion::begin

(

void

)

Returns

first position

begin() [2/2]

const hts_pos_t& theplu::yat::omic::BamRegion::begin

(

void

)

const

Returns

first position

end() [1/2]

hts_pos_t& theplu::yat::omic::BamRegion::end

(

void

)

Returns

end position

end() [2/2]

const hts_pos_t& theplu::yat::omic::BamRegion::end

(

void

)

const

Returns

end position

tid() [1/2]

int& theplu::yat::omic::BamRegion::tid

(

void

)

Returns

chromosome ID

tid() [2/2]

const int& theplu::yat::omic::BamRegion::tid

(

void

)

const

Returns

chromosome ID

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The documentation for this class was generated from the following file:

• yat/omic/BamRegion.h