| ../ |
| alignment_statistics.sh |
54 (100%) |
25 (100%) |
18 (100%) |
11 (100%) |
6640 |
nicklas |
| allele_counter.R |
83 (100%) |
0 |
75 (100%) |
8 (100%) |
7278 |
nicklas |
| ascat.sh |
121 (100%) |
73 (100%) |
30 (100%) |
18 (100%) |
7341 |
nicklas |
| beta_values.R |
194 (100%) |
0 |
143 (100%) |
51 (100%) |
6886 |
nicklas |
| bwa-mem2.sh |
323 (100%) |
222 (100%) |
57 (100%) |
44 (100%) |
7183 |
nicklas |
| check-illumina-directory.sh |
45 (100%) |
40 (100%) |
1 (100%) |
4 (100%) |
6678 |
nicklas |
| demux-utils.sh |
196 (100%) |
135 (100%) |
46 (100%) |
15 (100%) |
6955 |
nicklas |
| fix_cufflinks_tracking_id.sh |
24 (100%) |
1 (100%) |
14 (100%) |
9 (100%) |
6675 |
nicklas |
| gc_stat.py |
88 (100%) |
0 |
67 (100%) |
21 (100%) |
6656 |
nicklas |
| get_run_parameters.sh |
48 (100%) |
32 (100%) |
10 (100%) |
6 (100%) |
6665 |
nicklas |
| hisat.sh |
222 (100%) |
165 (100%) |
33 (100%) |
24 (100%) |
6676 |
nicklas |
| hisat2023.sh |
148 (100%) |
99 (100%) |
29 (100%) |
20 (100%) |
6814 |
nicklas |
| hiseq_status.sh |
88 (100%) |
36 (100%) |
38 (100%) |
14 (100%) |
6663 |
nicklas |
| import-fastq.sh |
104 (100%) |
68 (100%) |
21 (100%) |
15 (100%) |
6669 |
nicklas |
| legacy.sh |
147 (100%) |
95 (100%) |
32 (100%) |
20 (100%) |
6675 |
nicklas |
| mbaf.sh |
83 (100%) |
52 (100%) |
20 (100%) |
11 (100%) |
6669 |
nicklas |
| methylation-beta.sh |
96 (100%) |
56 (100%) |
21 (100%) |
19 (100%) |
6875 |
nicklas |
| mutation_signature.R |
143 (100%) |
0 |
110 (100%) |
33 (100%) |
6656 |
nicklas |
| nextseq_status.sh |
68 (100%) |
27 (100%) |
31 (100%) |
10 (100%) |
6663 |
nicklas |
| novaseq_status.sh |
92 (100%) |
40 (100%) |
38 (100%) |
14 (100%) |
6663 |
nicklas |
| readlength_averager.awk |
21 (100%) |
0 |
12 (100%) |
9 (100%) |
6649 |
nicklas |
| reggie-utils.sh |
136 (100%) |
92 (100%) |
30 (100%) |
14 (100%) |
7106 |
nicklas |
| rnaseq-demux.sh |
235 (100%) |
157 (100%) |
45 (100%) |
33 (100%) |
6669 |
nicklas |
| run_ascat.R |
124 (100%) |
0 |
104 (100%) |
20 (100%) |
7421 |
nicklas |
| singlecolumnaverager.awk |
31 (100%) |
0 |
22 (100%) |
9 (100%) |
6640 |
nicklas |
| stderrwrap.sh |
37 (100%) |
13 (100%) |
15 (100%) |
9 (100%) |
6656 |
nicklas |
| stdwrap.sh |
38 (100%) |
13 (100%) |
16 (100%) |
9 (100%) |
6630 |
nicklas |
| stringtie.sh |
114 (100%) |
78 (100%) |
23 (100%) |
13 (100%) |
6669 |
nicklas |
| stringtie2023.sh |
77 (100%) |
46 (100%) |
19 (100%) |
12 (100%) |
6820 |
nicklas |
| targeted-genotyping.sh |
164 (100%) |
109 (100%) |
34 (100%) |
21 (100%) |
6669 |
nicklas |
| variantcall-utils.sh |
145 (100%) |
92 (100%) |
41 (100%) |
12 (100%) |
6665 |
nicklas |
| variantcall.sh |
207 (100%) |
139 (100%) |
46 (100%) |
22 (100%) |
6669 |
nicklas |
| wgs_paired_vcall.sh |
405 (100%) |
295 (100%) |
52 (100%) |
58 (100%) |
7439 |
nicklas |
| wgs_pon_build.sh |
119 (100%) |
80 (100%) |
14 (100%) |
25 (100%) |
7415 |
nicklas |
| wgs_pon_vcall.sh |
188 (100%) |
130 (100%) |
26 (100%) |
32 (100%) |
7415 |
nicklas |
| Total |
4408 (100%) |
2410 (100%) |
1333 (100%) |
665 (100%) |
7439 |
nicklas |
![[plot]](../../../../../../../../../../../../../add/images/comments/extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/grid/scripts/index.png)