| ../ |
| alignment_statistics.sh |
54 (100%) |
25 (100%) |
18 (100%) |
11 (100%) |
6640 |
nicklas |
| allele_counter.R |
46 (100%) |
0 |
38 (100%) |
8 (100%) |
7278 |
nicklas |
| ascat.sh |
99 (100%) |
57 (100%) |
25 (100%) |
17 (100%) |
7341 |
nicklas |
| beta_values.R |
175 (100%) |
0 |
127 (100%) |
48 (100%) |
6886 |
nicklas |
| bwa-mem2.sh |
243 (100%) |
157 (100%) |
45 (100%) |
41 (100%) |
7183 |
nicklas |
| check-illumina-directory.sh |
16 (100%) |
13 (100%) |
1 (100%) |
2 (100%) |
6678 |
nicklas |
| demux-utils.sh |
177 (100%) |
117 (100%) |
45 (100%) |
15 (100%) |
6955 |
nicklas |
| fix_cufflinks_tracking_id.sh |
24 (100%) |
1 (100%) |
14 (100%) |
9 (100%) |
6675 |
nicklas |
| gc_stat.py |
88 (100%) |
0 |
67 (100%) |
21 (100%) |
6656 |
nicklas |
| get_run_parameters.sh |
47 (100%) |
31 (100%) |
10 (100%) |
6 (100%) |
6665 |
nicklas |
| hisat.sh |
147 (100%) |
98 (100%) |
29 (100%) |
20 (100%) |
6676 |
nicklas |
| hisat2023.sh |
148 (100%) |
99 (100%) |
29 (100%) |
20 (100%) |
6814 |
nicklas |
| hiseq_status.sh |
87 (100%) |
35 (100%) |
38 (100%) |
14 (100%) |
6663 |
nicklas |
| import-fastq.sh |
90 (100%) |
55 (100%) |
21 (100%) |
14 (100%) |
6669 |
nicklas |
| legacy.sh |
147 (100%) |
95 (100%) |
32 (100%) |
20 (100%) |
6675 |
nicklas |
| mbaf.sh |
61 (100%) |
33 (100%) |
17 (100%) |
11 (100%) |
6669 |
nicklas |
| methylation-beta.sh |
70 (100%) |
36 (100%) |
18 (100%) |
16 (100%) |
6875 |
nicklas |
| mutation_signature.R |
143 (100%) |
0 |
110 (100%) |
33 (100%) |
6656 |
nicklas |
| nextseq_status.sh |
67 (100%) |
26 (100%) |
31 (100%) |
10 (100%) |
6663 |
nicklas |
| novaseq_status.sh |
91 (100%) |
39 (100%) |
38 (100%) |
14 (100%) |
6663 |
nicklas |
| readlength_averager.awk |
21 (100%) |
0 |
12 (100%) |
9 (100%) |
6649 |
nicklas |
| reggie-utils.sh |
125 (100%) |
81 (100%) |
30 (100%) |
14 (100%) |
7106 |
nicklas |
| rnaseq-demux.sh |
158 (100%) |
96 (100%) |
36 (100%) |
26 (100%) |
6669 |
nicklas |
| run_ascat.R |
69 (100%) |
0 |
53 (100%) |
16 (100%) |
7421 |
nicklas |
| singlecolumnaverager.awk |
31 (100%) |
0 |
22 (100%) |
9 (100%) |
6640 |
nicklas |
| stderrwrap.sh |
37 (100%) |
13 (100%) |
15 (100%) |
9 (100%) |
6656 |
nicklas |
| stdwrap.sh |
37 (100%) |
13 (100%) |
15 (100%) |
9 (100%) |
6630 |
nicklas |
| stringtie.sh |
77 (100%) |
46 (100%) |
19 (100%) |
12 (100%) |
6669 |
nicklas |
| stringtie2023.sh |
77 (100%) |
46 (100%) |
19 (100%) |
12 (100%) |
6820 |
nicklas |
| targeted-genotyping.sh |
124 (100%) |
74 (100%) |
31 (100%) |
19 (100%) |
6669 |
nicklas |
| variantcall-utils.sh |
140 (100%) |
87 (100%) |
41 (100%) |
12 (100%) |
6665 |
nicklas |
| variantcall.sh |
172 (100%) |
107 (100%) |
44 (100%) |
21 (100%) |
6669 |
nicklas |
| wgs_paired_vcall.sh |
373 (100%) |
271 (100%) |
45 (100%) |
57 (100%) |
7439 |
nicklas |
| wgs_pon_build.sh |
117 (100%) |
78 (100%) |
14 (100%) |
25 (100%) |
7415 |
nicklas |
| wgs_pon_vcall.sh |
149 (100%) |
98 (100%) |
23 (100%) |
28 (100%) |
7415 |
nicklas |
| Total |
3727 (100%) |
1927 (100%) |
1172 (100%) |
628 (100%) |
7439 |
nicklas |
![[plot]](../../../../../../../../../../../../../blame/images/total/extensions/net.sf.basedb.reggie/trunk/src/net/sf/basedb/reggie/grid/scripts/index.png)