baseplugins/other/pipeline/trunk
![[plot]](../../../../../../classic/images/code/other/pipeline/trunk/index.png)
File Summary
| Node | Lines | Code | Comments | Other | Revision | Author |
|---|---|---|---|---|---|---|
| ../ | ||||||
| Rscript.sh | 9 | 6 | 1 | 2 | 5825 | jari |
| alignment_statistics.sh | 67 | 32 | 21 | 14 | 4589 | nicklas |
| fix_cufflinks_tracking_id.sh | 24 | 1 | 14 | 9 | 3589 | jari |
| fqpaste.pl | 88 | 75 | 5 | 8 | 5589 | nicklas |
| gc_stat.py | 88 | 0 | 67 | 21 | 5753 | nicklas |
| gc_stat.toml | 5 | 0 | 5 | 0 | 5709 | nicklas |
| hisat2 | 6 | 0 | 4 | 2 | 6521 | nicklas |
| hiseq_status.sh | 94 | 38 | 39 | 17 | 5476 | nicklas |
| mips_functions.sh | 350 | 186 | 121 | 43 | 5842 | nicklas |
| mut_stats.py | 144 | 0 | 114 | 30 | 5771 | nicklas |
| mutation_signature.R | 146 | 0 | 112 | 34 | 5807 | nicklas |
| nextseq_status.sh | 73 | 29 | 32 | 12 | 5474 | nicklas |
| novaseq_status.sh | 97 | 42 | 39 | 16 | 5934 | nicklas |
| picard2 | 16 | 0 | 12 | 4 | 5529 | nicklas |
| readlength_averager.awk | 21 | 0 | 12 | 9 | 6419 | nicklas |
| singlecolumnaverager.awk | 31 | 0 | 22 | 9 | 6378 | nicklas |
| stderrwrap.sh | 37 | 13 | 15 | 9 | 5698 | nicklas |
| stdwrap.sh | 37 | 13 | 15 | 9 | 3589 | jari |
| trimmomatic | 18 | 0 | 12 | 6 | 3589 | jari |
| Total | 1351 | 435 | 662 | 254 | 6521 | nicklas |
Author Summary
| Author | Lines | Code | Comments | Other | Revision | Date |
|---|---|---|---|---|---|---|
| jari | 5 | 3 | 2 | 0 | 5825 | 2020-02-06 10:05 |
| nicklas | 1346 | 432 | 660 | 254 | 6521 | 2021-12-14 10:41 |
| Total | 1351 | 435 | 662 | 254 | 6521 | 2021-12-14 10:41 |