baseplugins/other/pipeline/trunk
![[plot]](../../../../../../classic/images/total/other/pipeline/trunk/index.png)
File Summary for nicklas
| Node | Lines | Code | Comments | Other | Revision | Author |
|---|---|---|---|---|---|---|
| ../ | ||||||
| Rscript.sh | 6 (66%) | 3 (50%) | 1 (100%) | 2 (100%) | 5825 | jari |
| alignment_statistics.sh | 67 (100%) | 32 (100%) | 21 (100%) | 14 (100%) | 4589 | nicklas |
| fix_cufflinks_tracking_id.sh | 24 (100%) | 1 (100%) | 14 (100%) | 9 (100%) | 3589 | jari |
| fqpaste.pl | 88 (100%) | 75 (100%) | 5 (100%) | 8 (100%) | 5589 | nicklas |
| gc_stat.py | 88 (100%) | 0 | 67 (100%) | 21 (100%) | 5753 | nicklas |
| gc_stat.toml | 5 (100%) | 0 | 5 (100%) | 0 | 5709 | nicklas |
| hisat2 | 6 (100%) | 0 | 4 (100%) | 2 (100%) | 6521 | nicklas |
| hiseq_status.sh | 94 (100%) | 38 (100%) | 39 (100%) | 17 (100%) | 5476 | nicklas |
| mips_functions.sh | 350 (100%) | 186 (100%) | 121 (100%) | 43 (100%) | 5842 | nicklas |
| mut_stats.py | 144 (100%) | 0 | 114 (100%) | 30 (100%) | 5771 | nicklas |
| mutation_signature.R | 146 (100%) | 0 | 112 (100%) | 34 (100%) | 5807 | nicklas |
| nextseq_status.sh | 73 (100%) | 29 (100%) | 32 (100%) | 12 (100%) | 5474 | nicklas |
| novaseq_status.sh | 97 (100%) | 42 (100%) | 39 (100%) | 16 (100%) | 5934 | nicklas |
| picard2 | 16 (100%) | 0 | 12 (100%) | 4 (100%) | 5529 | nicklas |
| readlength_averager.awk | 21 (100%) | 0 | 12 (100%) | 9 (100%) | 6419 | nicklas |
| singlecolumnaverager.awk | 30 (96%) | 0 | 21 (95%) | 9 (100%) | 6378 | nicklas |
| stderrwrap.sh | 37 (100%) | 13 (100%) | 15 (100%) | 9 (100%) | 5698 | nicklas |
| stdwrap.sh | 37 (100%) | 13 (100%) | 15 (100%) | 9 (100%) | 3589 | jari |
| trimmomatic | 17 (94%) | 0 | 11 (91%) | 6 (100%) | 3589 | jari |
| Total | 1346 (99%) | 432 (99%) | 660 (99%) | 254 (100%) | 6521 | nicklas |
Author Summary
| Author | Lines | Code | Comments | Other | Revision | Date |
|---|---|---|---|---|---|---|
| jari | 5 | 3 | 2 | 0 | 5825 | 2020-02-06 10:05 |
| nicklas | 1346 | 432 | 660 | 254 | 6521 | 2021-12-14 10:41 |
| Total | 1351 | 435 | 662 | 254 | 6521 | 2021-12-14 10:41 |