yat  0.14.5pre
Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level 12345]
oCtheplu::yat::statistics::averager_base< Averager >
oCtheplu::yat::statistics::averager_base< Averager1 >
oCtheplu::yat::statistics::averager_base< Averager3 >
oCtheplu::yat::statistics::averager_base< Averager4 >
oCAssignable
oCCopyConstructible
oCDefaultConstructible
oCEqualityComparable
oCfunction_output_iterator
oCiterator_adaptor
oCiterator_facade
oCnoncopyable
oCoperators
oCtheplu::yat::statistics::Distance< EuclideanDistance >
oCtheplu::yat::utility::PriorityQueue< JobPtr, LowerPriority >
oCtheplu::yat::utility::Queue< JobPtr >
oCtheplu::yat::utility::SegmentTree< std::map< Segment< T, Compare >, Tp, SegmentCompare< T, Compare > >, Compare, PairFirst< const std::pair< const Segment< T, Compare >, Tp > > >
oCtheplu::yat::utility::SegmentTree< std::set< Segment< T, Compare >, SegmentCompare< T, Compare > >, Compare, Identity< const Segment< T, Compare > & > >
oCtheplu::yat::utility::SmartPtr< const std::vector< size_t > >
oCbinary_function
oCruntime_error
oCunary_function
oCtheplu::yat::classifier::ConsensusInputRankerRobust algorithm to rank rows in a data matrix versus a target vector
oCtheplu::yat::classifier::DataLookup1DClass for general vector view
oCtheplu::yat::classifier::DataLookupWeighted1DClass for general weighted vector view
oCtheplu::yat::classifier::EnsembleBuilder< Classifier, Data >Class for ensembles of supervised classifiers
oCtheplu::yat::classifier::FeatureSelectorInterface class for FeatureSelection
oCtheplu::yat::classifier::IGP< Distance >Class for In Group Proportions (IGP)
oCtheplu::yat::classifier::InputRankerClass for ranking rows in a matrix, using a Score and a target vector
oCtheplu::yat::classifier::IRRetrieveInterface class for retrieving information from a InputRanker to build a ConsensusInputRanker
oCtheplu::yat::classifier::KernelInterface Class for Kernels
oCtheplu::yat::classifier::KernelFunctionInterface class calculating elements in Kernel
oCtheplu::yat::classifier::KernelLookupLookup into Kernel
oCtheplu::yat::classifier::KNN_ReciprocalDistanceA model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample
oCtheplu::yat::classifier::KNN_ReciprocalRankA model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample
oCtheplu::yat::classifier::KNN_UniformA model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample
oCtheplu::yat::classifier::MatrixLookupGeneral view into utility::Matrix
oCtheplu::yat::classifier::MatrixLookupWeightedGeneral view into utility::MatrixWeighted
oCtheplu::yat::classifier::SamplerInterface class for dividing samples into training and validation
oCtheplu::yat::classifier::SubsetGenerator< Data >Class splitting Data into training and validation set
oCtheplu::yat::classifier::SupervisedClassifierInterface class for supervised classifiers that use data in a matrix format
oCtheplu::yat::classifier::SVindex
oCtheplu::yat::classifier::SVMSupport Vector Machine
oCtheplu::yat::classifier::SvmMultiClassSupport Vector Machine for more than two classes
oCtheplu::yat::classifier::TargetClass for containing sample labels
oCtheplu::yat::normalizer::Centralizer< UnaryFunction >Centralize a range
oCtheplu::yat::normalizer::ColumnNormalizer< T >Using a functor T to normalize each column
oCtheplu::yat::normalizer::GaussGaussian Normalizer
oCtheplu::yat::normalizer::qQuantileNormalizerPerform Q-quantile normalization
oCtheplu::yat::normalizer::QuantileNormalizerPerform quantile normalization
oCtheplu::yat::normalizer::RowNormalizer< T >Using a functor T to normalize each column
oCtheplu::yat::normalizer::SpearmanReplace elements with normalized rank
oCtheplu::yat::normalizer::ZscoreZero mean and unity variance
oCtheplu::yat::omic::BamHeaderWrapper around bam_hdr_t struct
oCtheplu::yat::omic::BamPair
oCtheplu::yat::omic::BamPairProxy
oCtheplu::yat::omic::BamReadClass holding a bam query
oCtheplu::yat::omic::Codon
oCtheplu::yat::omic::DnaComplementerFunctor that calculates genomic complement
oCtheplu::yat::omic::FastaWrapper class around struct faidx_t in libhts
oCtheplu::yat::omic::Fasta::Sequence
oCtheplu::yat::omic::GFF
oCtheplu::yat::omic::Pileup< Iterator >
oCtheplu::yat::omic::Pileup< Iterator >::Entry
oCtheplu::yat::random::ContinuousContinuous random number distributions
oCtheplu::yat::random::DiscreteDiscrete random number distributions
oCtheplu::yat::random::RNGRandom Number Generator
oCtheplu::yat::random::RNG_stateClass holding state of a random generator
oCtheplu::yat::regression::GSLInterpolationBase class for interfacing GSL interpolation
oCtheplu::yat::regression::KernelInterface Class for calculating the weights in a more general way than classical rectangular windows
oCtheplu::yat::regression::LocalClass for Locally weighted regression
oCtheplu::yat::regression::MultiDimensionalMultiDimesional fitting
oCtheplu::yat::regression::MultiDimensionalWeightedMultiDimesional fitting
oCtheplu::yat::regression::OneDimensionalInterface Class for One Dimensional fitting
oCtheplu::yat::regression::OneDimensionalWeightedInterface Class for One Dimensional fitting in a weighted fashion
oCtheplu::yat::statistics::AverageFunctor to take average of a range
oCtheplu::yat::statistics::averager< Iterator >
oCtheplu::yat::statistics::averager_base< Derived >Base class for averager classes
oCtheplu::yat::statistics::averager_pair< Iterator1, Iterator2 >
oCtheplu::yat::statistics::averager_traits< T >
oCtheplu::yat::statistics::averager_traits< utility::unweighted_iterator_tag >
oCtheplu::yat::statistics::averager_traits< utility::weighted_iterator_tag >
oCtheplu::yat::statistics::AveragerPairClass for taking care of mean and covariance of two variables
oCtheplu::yat::statistics::AveragerPairWeightedClass for taking care of mean and covariance of two variables in a weighted manner
oCtheplu::yat::statistics::AveragerWeightedClass to calulate averages with weights
oCtheplu::yat::statistics::Distance< Derived >A convenience class to implement Distance
oCtheplu::yat::statistics::FisherFisher's exact test
oCtheplu::yat::statistics::HistogramHistograms provide a convenient way of presenting the distribution of a set of data
oCtheplu::yat::statistics::KendallKendall's tau rank coefficient
oCtheplu::yat::statistics::KolmogorovSmirnovKolmogorov Smirnov Test
oCtheplu::yat::statistics::KolmogorovSmirnov::Element
oCtheplu::yat::statistics::KolmogorovSmirnovOneSampleKolmogorov Smirnov Test for one class
oCtheplu::yat::statistics::LikelihoodRatioTestBinomialLikelihood-ratio test for binomial data
oCtheplu::yat::statistics::PearsonCorrelationClass for calculating Pearson correlation
oCtheplu::yat::statistics::PearsonDistanceCalculates the Pearson correlation distance between two points given by elements of ranges
oCtheplu::yat::statistics::PercentilerFunctor to calculate percentile of a range
oCtheplu::yat::statistics::ROCReciever Operating Characteristic
oCtheplu::yat::statistics::ScoreInterface Class for score classes
oCtheplu::yat::statistics::SmootherEstimating a distribution in a smooth fashion
oCtheplu::yat::statistics::SpearmanSpearman rank correlation coefficient
oCtheplu::yat::statistics::tTestClass for Student's t-test
oCtheplu::yat::statistics::TukeyBiweightEstimatorTukey's Biweight Estimator
oCtheplu::yat::statistics::VectorFunctionInterface Class for vector functors
oCtheplu::yat::utility::AlignerAligning two sequences
oCtheplu::yat::utility::Aligner::CigarCompact Idiosyncratic Gapped Alignment Report
oCtheplu::yat::utility::BasicStreamRedirect< charT, traits >Redirect a stream to another stream
oCtheplu::yat::utility::ColumnStream
oCtheplu::yat::utility::CommandLineClass for parsing the command line
oCtheplu::yat::utility::Container2D< T >Concept check for Container2D
oCtheplu::yat::utility::DataIteratorConcept< T >Concept check for Data Iterator
oCtheplu::yat::utility::DataWeightHolds a pair of data and associated weight
oCtheplu::yat::utility::DataWeightProxy< DataIterator, WeightIterator >Proxy class for DataWeight
oCtheplu::yat::utility::DeleterFunctor that deletes an object
oCtheplu::yat::utility::detail::weighted_iterator::Traversal< DataIterator, WeightIterator >
oCtheplu::yat::utility::FileUtilChecking file/directory existence and access permissions
oCtheplu::yat::utility::IndexClass for storing indices of, e.g., a MatrixLookup
oCtheplu::yat::utility::iterator_traits< Iter >
oCtheplu::yat::utility::KernelMatrix< RandomAccessRange1, RandomAccessRange2, BinaryFunctor >A KernelMatrix is a Container2D
oCtheplu::yat::utility::KernelPCAPrincipal Component Analysis on a Kernel Matrix
oCtheplu::yat::utility::MatrixInterface to GSL matrix
oCtheplu::yat::utility::MatrixWeightedWeighted Matrix
oCtheplu::yat::utility::NNIInterface class for nearest neighbour imputation (NNI) algorithms
oCtheplu::yat::utility::OptionContainer of variables for an option
oCtheplu::yat::utility::pair_value_compare< T1, T2 >Functor comparing pairs using second
oCtheplu::yat::utility::PairFirst< Pair >Functor that return std::pair.first
oCtheplu::yat::utility::PairSecond< Pair >Functor that return std::pair.second
oCtheplu::yat::utility::PCAPrincipal Component Analysis
oCtheplu::yat::utility::PriorityQueue< T, Compare >Multi-thread safe priority queue
oCtheplu::yat::utility::Queue< T >Multi-thread safe queue
oCtheplu::yat::utility::Range< T >A class for storing a shallow copy of a Range
oCtheplu::yat::utility::SchedulerHandle a number of jobs and send them to threads
oCtheplu::yat::utility::Scheduler::Job
oCtheplu::yat::utility::Segment< T, Compare >Class for a Segment or Interval
oCtheplu::yat::utility::SegmentTree< Container, Compare, Value2Key >Base Class for SegmentSet and SegmentMap
oCtheplu::yat::utility::SmartPtr< T >
oCtheplu::yat::utility::SmithWaterman
oCtheplu::yat::utility::SVDSingular Value Decomposition
oCtheplu::yat::utility::TypeInfoWrapper class for storing std::type_info
oCtheplu::yat::utility::unweighted_iterator_tag
oCtheplu::yat::utility::VectorBaseThis is the yat interface to GSL vector
oCtheplu::yat::utility::weighted_if_any2< T1, T2 >
oCtheplu::yat::utility::weighted_if_any3< T1, T2, T3 >
oCtheplu::yat::utility::weighted_iterator_tag
oCtheplu::yat::utility::weighted_iterator_traits< Iterator >
\Ctheplu::yat::utility::WeightedIteratorArchetype_ctor_arg

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