theplu::yat::omic::Codon Class Reference

#include <yat/omic/Codon.h>

List of all members.

Classes
struct	Compare_
Public Member Functions
	Codon (void)
	Defaulf constructor.
	Codon (const std::string &str)
	Codon (const DNA &first, const DNA &second, const DNA &third)
char	amino_acid (void) const
const DNA &	operator() (size_t i) const
bool	start (void) const
bool	stop (void) const

---

Detailed Description

Class holding a triplet of DNAs that are translated to an amino acid.

Ala	A	GCT,GCC,GCA,GCG
Leu	L	TTA,TTG,CTT,CTC,CTA,CTG
Arg	R	CGT,CGC,CGA,CGG,AGA,AGG
Lys	K	AAA,AAG
Asn	N	AAT,AAC
Met	M	ATG
Asp	D	GAT,GAC
Phe	F	TTT,TTC
Cys	C	TGT,TGC
Pro	P	CCT,CCC,CCA,CCG
Gln	Q	CAA,CAG
Ser	S	TCT,TCC,TCA,TCG,AGT,AGC
Glu	E	GAA,GAG
Thr	T	ACT,ACC,ACA,ACG
Gly	G	GGT,GGC,GGA,GGG
Trp	W	TGG
His	H	CAT,CAC
Tyr	Y	TAT,TAC
Ile	I	ATT,ATC,ATA
Val	V	GTT,GTC,GTA,GTG
START		ATG
STOP*		TAA,TGA,TAG

Since:

New in yat 0.7

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Constructor & Destructor Documentation

theplu::yat::omic::Codon::Codon

(

void

)

Defaulf constructor.

Value is undefined

theplu::yat::omic::Codon::Codon

(

const std::string &

str

)

str must be three characters long and each character must be convertible to a DNA.

See also:

DNA

theplu::yat::omic::Codon::Codon	(	const DNA &	first,
		const DNA &	second,
		const DNA &	third
	)

Create Codon from three DNA

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Member Function Documentation

char theplu::yat::omic::Codon::amino_acid

(

void

)

const

Returns:

one character describing which amino acid the Codon translates to.

const DNA& theplu::yat::omic::Codon::operator()

(

size_t

i

)

const

Returns:

i th DNA

bool theplu::yat::omic::Codon::start

(

void

)

const

Returns:

true if Codon is a start Codon: "ATG"

bool theplu::yat::omic::Codon::stop

(

void

)

const

Returns:

true if Codon is a stop codon (see class docs).

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The documentation for this class was generated from the following file:

• yat/omic/Codon.h