../ |
alignment_statistics.sh |
54 |
25 |
18 |
11 |
6640 |
nicklas |
allele_counter.R |
46 |
0 |
38 |
8 |
7278 |
nicklas |
ascat.sh |
99 |
57 |
25 |
17 |
7341 |
nicklas |
beta_values.R |
175 |
0 |
127 |
48 |
6886 |
nicklas |
bwa-mem2.sh |
243 |
157 |
45 |
41 |
7183 |
nicklas |
check-illumina-directory.sh |
16 |
13 |
1 |
2 |
6678 |
nicklas |
demux-utils.sh |
177 |
117 |
45 |
15 |
6955 |
nicklas |
fix_cufflinks_tracking_id.sh |
24 |
1 |
14 |
9 |
6675 |
nicklas |
gc_stat.py |
88 |
0 |
67 |
21 |
6656 |
nicklas |
get_run_parameters.sh |
47 |
31 |
10 |
6 |
6665 |
nicklas |
hisat.sh |
147 |
98 |
29 |
20 |
6676 |
nicklas |
hisat2023.sh |
148 |
99 |
29 |
20 |
6814 |
nicklas |
hiseq_status.sh |
87 |
35 |
38 |
14 |
6663 |
nicklas |
import-fastq.sh |
90 |
55 |
21 |
14 |
6669 |
nicklas |
legacy.sh |
147 |
95 |
32 |
20 |
6675 |
nicklas |
mbaf.sh |
61 |
33 |
17 |
11 |
6669 |
nicklas |
methylation-beta.sh |
70 |
36 |
18 |
16 |
6875 |
nicklas |
mutation_signature.R |
143 |
0 |
110 |
33 |
6656 |
nicklas |
nextseq_status.sh |
67 |
26 |
31 |
10 |
6663 |
nicklas |
novaseq_status.sh |
91 |
39 |
38 |
14 |
6663 |
nicklas |
readlength_averager.awk |
21 |
0 |
12 |
9 |
6649 |
nicklas |
reggie-utils.sh |
125 |
81 |
30 |
14 |
7106 |
nicklas |
rnaseq-demux.sh |
158 |
96 |
36 |
26 |
6669 |
nicklas |
run_ascat.R |
69 |
0 |
53 |
16 |
7421 |
nicklas |
singlecolumnaverager.awk |
31 |
0 |
22 |
9 |
6640 |
nicklas |
stderrwrap.sh |
37 |
13 |
15 |
9 |
6656 |
nicklas |
stdwrap.sh |
37 |
13 |
15 |
9 |
6630 |
nicklas |
stringtie.sh |
77 |
46 |
19 |
12 |
6669 |
nicklas |
stringtie2023.sh |
77 |
46 |
19 |
12 |
6820 |
nicklas |
targeted-genotyping.sh |
124 |
74 |
31 |
19 |
6669 |
nicklas |
variantcall-utils.sh |
140 |
87 |
41 |
12 |
6665 |
nicklas |
variantcall.sh |
172 |
107 |
44 |
21 |
6669 |
nicklas |
wgs_paired_vcall.sh |
373 |
271 |
45 |
57 |
7439 |
nicklas |
wgs_pon_build.sh |
117 |
78 |
14 |
25 |
7415 |
nicklas |
wgs_pon_vcall.sh |
149 |
98 |
23 |
28 |
7415 |
nicklas |
Total |
3727 |
1927 |
1172 |
628 |
7439 |
nicklas |