../ |
alignment_statistics.sh |
54 |
25 |
18 |
11 |
6640 |
nicklas |
allele_counter.R |
83 |
0 |
75 |
8 |
7278 |
nicklas |
ascat.sh |
121 |
73 |
30 |
18 |
7341 |
nicklas |
beta_values.R |
194 |
0 |
143 |
51 |
6886 |
nicklas |
bwa-mem2.sh |
323 |
222 |
57 |
44 |
7183 |
nicklas |
check-illumina-directory.sh |
45 |
40 |
1 |
4 |
6678 |
nicklas |
demux-utils.sh |
196 |
135 |
46 |
15 |
6955 |
nicklas |
fix_cufflinks_tracking_id.sh |
24 |
1 |
14 |
9 |
6675 |
nicklas |
gc_stat.py |
88 |
0 |
67 |
21 |
6656 |
nicklas |
get_run_parameters.sh |
48 |
32 |
10 |
6 |
6665 |
nicklas |
hisat.sh |
222 |
165 |
33 |
24 |
6676 |
nicklas |
hisat2023.sh |
148 |
99 |
29 |
20 |
6814 |
nicklas |
hiseq_status.sh |
88 |
36 |
38 |
14 |
6663 |
nicklas |
import-fastq.sh |
104 |
68 |
21 |
15 |
6669 |
nicklas |
legacy.sh |
147 |
95 |
32 |
20 |
6675 |
nicklas |
mbaf.sh |
83 |
52 |
20 |
11 |
6669 |
nicklas |
methylation-beta.sh |
96 |
56 |
21 |
19 |
6875 |
nicklas |
mutation_signature.R |
143 |
0 |
110 |
33 |
6656 |
nicklas |
nextseq_status.sh |
68 |
27 |
31 |
10 |
6663 |
nicklas |
novaseq_status.sh |
92 |
40 |
38 |
14 |
6663 |
nicklas |
readlength_averager.awk |
21 |
0 |
12 |
9 |
6649 |
nicklas |
reggie-utils.sh |
136 |
92 |
30 |
14 |
7106 |
nicklas |
rnaseq-demux.sh |
235 |
157 |
45 |
33 |
6669 |
nicklas |
run_ascat.R |
124 |
0 |
104 |
20 |
7421 |
nicklas |
singlecolumnaverager.awk |
31 |
0 |
22 |
9 |
6640 |
nicklas |
stderrwrap.sh |
37 |
13 |
15 |
9 |
6656 |
nicklas |
stdwrap.sh |
38 |
13 |
16 |
9 |
6630 |
nicklas |
stringtie.sh |
114 |
78 |
23 |
13 |
6669 |
nicklas |
stringtie2023.sh |
77 |
46 |
19 |
12 |
6820 |
nicklas |
targeted-genotyping.sh |
164 |
109 |
34 |
21 |
6669 |
nicklas |
variantcall-utils.sh |
145 |
92 |
41 |
12 |
6665 |
nicklas |
variantcall.sh |
207 |
139 |
46 |
22 |
6669 |
nicklas |
wgs_paired_vcall.sh |
405 |
295 |
52 |
58 |
7439 |
nicklas |
wgs_pon_build.sh |
119 |
80 |
14 |
25 |
7415 |
nicklas |
wgs_pon_vcall.sh |
188 |
130 |
26 |
32 |
7415 |
nicklas |
Total |
4408 |
2410 |
1333 |
665 |
7439 |
nicklas |