yat/yat/omic

[plot]

File Summary

Node Lines Code Comments Other Revision Author
../
BamFile.cc 457 323 52 82 4359 peter
BamFile.h 502 191 135 176 3999 peter
BamHeader.cc 483 349 55 79 4359 peter
BamHeader.h 382 94 137 151 4359 peter
BamPair.cc 98 48 17 33 4089 peter
BamPair.h 131 34 40 57 4089 peter
BamPairBuffer.h 80 26 30 24 4057 peter
BamPairIterator.h 305 172 71 62 4089 peter
BamPairIterator2.h 285 163 56 66 4057 peter
BamRead.cc 803 566 70 167 4359 peter
BamRead.h 814 208 295 311 4359 peter
BamReadFilter.cc 53 21 17 15 4359 peter
BamReadFilter.h 98 32 41 25 4359 peter
BamReadIterator.cc 315 206 37 72 4359 peter
BamReadIterator.h 265 97 100 68 4359 peter
BamReadSequenceIterator.cc 136 80 14 42 4345 peter
BamReadSequenceIterator.h 126 48 33 45 4345 peter
BamRegion.cc 70 33 13 24 4272 peter
BamRegion.h 90 25 28 37 4275 peter
BamWriteIterator.cc 85 28 29 28 3999 peter
BamWriteIterator.h 138 33 60 45 4359 peter
Codon.cc 304 244 20 40 4089 peter
Codon.h 188 51 74 63 4359 peter
DNA.cc 255 188 21 46 4245 peter
DNA.h 197 39 87 71 4245 peter
DnaComplementer.cc 72 28 27 17 4346 peter
DnaComplementer.h 67 11 35 21 4346 peter
Fasta.cc 299 201 48 50 4359 peter
Fasta.h 199 54 70 75 4346 peter
GFF.cc 195 129 22 44 3875 peter
GFF.h 156 39 47 70 3114 peter
GFF2.cc 70 34 23 13 4252 peter
GFF2.h 51 13 21 17 4359 peter
GFF3.cc 56 25 16 15 4252 peter
GFF3.h 49 15 17 17 3114 peter
GenomicPosition.cc 111 59 18 34 4359 peter
GenomicPosition.h 156 28 64 64 4359 peter
Makefile 21 2 13 6 2824 peter
Makefile.am 133 96 24 13 4359 peter
Pileup.h 625 347 125 153 4019 peter
VCF.cc 844 637 37 170 4359 peter
VCF.h 850 356 197 297 4316 peter
VcfCompare.cc 82 48 12 22 3759 peter
VcfCompare.h 76 21 28 27 4359 peter
VcfFile.cc 155 91 26 38 4089 peter
VcfFile.h 150 46 48 56 4207 peter
VcfHeader.cc 410 316 17 77 4308 peter
VcfHeader.h 211 54 72 85 3999 peter
VcfIterator.cc 42 14 13 15 3774 peter
VcfIterator.h 69 17 28 24 3774 peter
algorithm.h 300 142 97 61 3999 peter
config_bam.h 120 52 49 19 4346 peter
hts.cc 248 135 59 54 4278 peter
phred.cc 43 15 13 15 3325 peter
phred.h 55 9 23 23 3326 peter
Total 12575 6333 2821 3421 4359 peter

Author Summary

Author Lines Code Comments Other Revision Date
peter1257563332821342143592023-08-23  01:28
Total 12575 6333 2821 3421 4359 2023-08-23  01:28