| ../ |
| BamFile.cc |
457 |
323 |
52 |
82 |
4359 |
peter |
| BamFile.h |
502 |
191 |
135 |
176 |
3999 |
peter |
| BamHeader.cc |
483 |
349 |
55 |
79 |
4359 |
peter |
| BamHeader.h |
382 |
94 |
137 |
151 |
4359 |
peter |
| BamPair.cc |
98 |
48 |
17 |
33 |
4089 |
peter |
| BamPair.h |
131 |
34 |
40 |
57 |
4089 |
peter |
| BamPairBuffer.h |
80 |
26 |
30 |
24 |
4057 |
peter |
| BamPairIterator.h |
305 |
172 |
71 |
62 |
4089 |
peter |
| BamPairIterator2.h |
285 |
163 |
56 |
66 |
4057 |
peter |
| BamRead.cc |
803 |
566 |
70 |
167 |
4359 |
peter |
| BamRead.h |
814 |
208 |
295 |
311 |
4359 |
peter |
| BamReadFilter.cc |
53 |
21 |
17 |
15 |
4359 |
peter |
| BamReadFilter.h |
98 |
32 |
41 |
25 |
4359 |
peter |
| BamReadIterator.cc |
315 |
206 |
37 |
72 |
4359 |
peter |
| BamReadIterator.h |
265 |
97 |
100 |
68 |
4359 |
peter |
| BamReadSequenceIterator.cc |
136 |
80 |
14 |
42 |
4345 |
peter |
| BamReadSequenceIterator.h |
126 |
48 |
33 |
45 |
4345 |
peter |
| BamRegion.cc |
70 |
33 |
13 |
24 |
4272 |
peter |
| BamRegion.h |
90 |
25 |
28 |
37 |
4275 |
peter |
| BamWriteIterator.cc |
85 |
28 |
29 |
28 |
3999 |
peter |
| BamWriteIterator.h |
138 |
33 |
60 |
45 |
4359 |
peter |
| Codon.cc |
304 |
244 |
20 |
40 |
4089 |
peter |
| Codon.h |
188 |
51 |
74 |
63 |
4359 |
peter |
| DNA.cc |
255 |
188 |
21 |
46 |
4245 |
peter |
| DNA.h |
197 |
39 |
87 |
71 |
4245 |
peter |
| DnaComplementer.cc |
72 |
28 |
27 |
17 |
4346 |
peter |
| DnaComplementer.h |
67 |
11 |
35 |
21 |
4346 |
peter |
| Fasta.cc |
299 |
201 |
48 |
50 |
4359 |
peter |
| Fasta.h |
199 |
54 |
70 |
75 |
4346 |
peter |
| GFF.cc |
195 |
129 |
22 |
44 |
3875 |
peter |
| GFF.h |
156 |
39 |
47 |
70 |
3114 |
peter |
| GFF2.cc |
70 |
34 |
23 |
13 |
4252 |
peter |
| GFF2.h |
51 |
13 |
21 |
17 |
4359 |
peter |
| GFF3.cc |
56 |
25 |
16 |
15 |
4252 |
peter |
| GFF3.h |
49 |
15 |
17 |
17 |
3114 |
peter |
| GenomicPosition.cc |
111 |
59 |
18 |
34 |
4359 |
peter |
| GenomicPosition.h |
156 |
28 |
64 |
64 |
4359 |
peter |
| Makefile |
21 |
2 |
13 |
6 |
2824 |
peter |
| Makefile.am |
133 |
96 |
24 |
13 |
4359 |
peter |
| Pileup.h |
625 |
347 |
125 |
153 |
4019 |
peter |
| VCF.cc |
844 |
637 |
37 |
170 |
4359 |
peter |
| VCF.h |
850 |
356 |
197 |
297 |
4316 |
peter |
| VcfCompare.cc |
82 |
48 |
12 |
22 |
3759 |
peter |
| VcfCompare.h |
76 |
21 |
28 |
27 |
4359 |
peter |
| VcfFile.cc |
155 |
91 |
26 |
38 |
4089 |
peter |
| VcfFile.h |
150 |
46 |
48 |
56 |
4207 |
peter |
| VcfHeader.cc |
410 |
316 |
17 |
77 |
4308 |
peter |
| VcfHeader.h |
211 |
54 |
72 |
85 |
3999 |
peter |
| VcfIterator.cc |
42 |
14 |
13 |
15 |
3774 |
peter |
| VcfIterator.h |
69 |
17 |
28 |
24 |
3774 |
peter |
| algorithm.h |
300 |
142 |
97 |
61 |
3999 |
peter |
| config_bam.h |
120 |
52 |
49 |
19 |
4346 |
peter |
| hts.cc |
248 |
135 |
59 |
54 |
4278 |
peter |
| phred.cc |
43 |
15 |
13 |
15 |
3325 |
peter |
| phred.h |
55 |
9 |
23 |
23 |
3326 |
peter |
| Total |
12575 |
6333 |
2821 |
3421 |
4359 |
peter |
![[plot]](../../../../../add/images/total/yat/omic/index.png)