yat/yat/omic

[plot]

File Summary

Node Lines Code Comments Other Revision Author
../
BamFile.cc 266 181 19 66 4359 peter
BamFile.h 426 151 103 172 3999 peter
BamHeader.cc 311 220 21 70 4359 peter
BamHeader.h 316 73 102 141 4359 peter
BamPair.cc 95 48 14 33 4089 peter
BamPair.h 128 34 37 57 4089 peter
BamPairBuffer.h 80 26 30 24 4057 peter
BamPairIterator.h 247 130 57 60 4089 peter
BamPairIterator2.h 275 154 55 66 4057 peter
BamRead.cc 562 371 42 149 4359 peter
BamRead.h 642 152 206 284 4359 peter
BamReadFilter.cc 48 20 13 15 4359 peter
BamReadFilter.h 87 26 36 25 4359 peter
BamReadIterator.cc 242 159 18 65 4359 peter
BamReadIterator.h 212 72 77 63 4359 peter
BamReadSequenceIterator.cc 136 80 14 42 4345 peter
BamReadSequenceIterator.h 126 48 33 45 4345 peter
BamRegion.cc 70 33 13 24 4272 peter
BamRegion.h 90 25 28 37 4275 peter
BamWriteIterator.cc 61 25 13 23 3999 peter
BamWriteIterator.h 111 30 40 41 4359 peter
Codon.cc 244 195 13 36 4089 peter
Codon.h 159 43 63 53 4359 peter
DNA.cc 163 111 15 37 4245 peter
DNA.h 172 31 76 65 4245 peter
DnaComplementer.cc 53 27 13 13 4346 peter
DnaComplementer.h 47 11 19 17 4346 peter
Fasta.cc 193 128 22 43 4359 peter
Fasta.h 167 44 54 69 4346 peter
GFF.cc 173 114 19 40 3875 peter
GFF.h 153 39 45 69 3114 peter
GFF2.cc 58 27 18 13 4252 peter
GFF2.h 45 13 16 16 4359 peter
GFF3.cc 50 23 13 14 4252 peter
GFF3.h 46 15 15 16 3114 peter
GenomicPosition.cc 97 53 12 32 4359 peter
GenomicPosition.h 145 27 57 61 4359 peter
Makefile 20 1 13 6 2824 peter
Makefile.am 75 55 13 7 4359 peter
Pileup.h 442 211 92 139 4019 peter
VCF.cc 757 563 26 168 4359 peter
VCF.h 756 308 166 282 4316 peter
VcfCompare.cc 82 48 12 22 3759 peter
VcfCompare.h 73 21 25 27 4359 peter
VcfFile.cc 148 88 22 38 4089 peter
VcfFile.h 128 33 42 53 4207 peter
VcfHeader.cc 357 274 12 71 4308 peter
VcfHeader.h 207 54 68 85 3999 peter
VcfIterator.cc 42 14 13 15 3774 peter
VcfIterator.h 69 17 28 24 3774 peter
algorithm.h 197 76 70 51 3999 peter
config_bam.h 53 12 26 15 4346 peter
hts.cc 248 135 59 54 4278 peter
phred.cc 43 15 13 15 3325 peter
phred.h 54 9 22 23 3326 peter
Total 10247 4893 2163 3191 4359 peter

Author Summary

Author Lines Code Comments Other Revision Date
peter1024748932163319143592023-08-23  01:28
Total 10247 4893 2163 3191 4359 2023-08-23  01:28