| ../ |
| BamFile.cc |
266 |
181 |
19 |
66 |
4278 |
peter |
| BamFile.h |
426 |
151 |
103 |
172 |
3999 |
peter |
| BamHeader.cc |
311 |
220 |
21 |
70 |
4290 |
peter |
| BamHeader.h |
316 |
73 |
102 |
141 |
4290 |
peter |
| BamPair.cc |
95 |
48 |
14 |
33 |
4089 |
peter |
| BamPair.h |
128 |
34 |
37 |
57 |
4089 |
peter |
| BamPairBuffer.h |
80 |
26 |
30 |
24 |
4057 |
peter |
| BamPairIterator.h |
247 |
130 |
57 |
60 |
4089 |
peter |
| BamPairIterator2.h |
275 |
154 |
55 |
66 |
4057 |
peter |
| BamRead.cc |
562 |
371 |
42 |
149 |
4266 |
peter |
| BamRead.h |
642 |
152 |
206 |
284 |
4339 |
peter |
| BamReadFilter.cc |
48 |
20 |
13 |
15 |
3792 |
peter |
| BamReadFilter.h |
87 |
26 |
36 |
25 |
4339 |
peter |
| BamReadIterator.cc |
242 |
159 |
18 |
65 |
4274 |
peter |
| BamReadIterator.h |
212 |
72 |
77 |
63 |
4274 |
peter |
| BamReadSequenceIterator.cc |
136 |
80 |
14 |
42 |
4345 |
peter |
| BamReadSequenceIterator.h |
126 |
48 |
33 |
45 |
4345 |
peter |
| BamRegion.cc |
70 |
33 |
13 |
24 |
4272 |
peter |
| BamRegion.h |
90 |
25 |
28 |
37 |
4275 |
peter |
| BamWriteIterator.cc |
61 |
25 |
13 |
23 |
3999 |
peter |
| BamWriteIterator.h |
112 |
30 |
41 |
41 |
4339 |
peter |
| Codon.cc |
244 |
195 |
13 |
36 |
4089 |
peter |
| Codon.h |
159 |
43 |
63 |
53 |
4339 |
peter |
| DNA.cc |
163 |
111 |
15 |
37 |
4245 |
peter |
| DNA.h |
172 |
31 |
76 |
65 |
4245 |
peter |
| DnaComplementer.cc |
53 |
27 |
13 |
13 |
4346 |
peter |
| DnaComplementer.h |
47 |
11 |
19 |
17 |
4346 |
peter |
| Fasta.cc |
193 |
128 |
22 |
43 |
4346 |
peter |
| Fasta.h |
167 |
44 |
54 |
69 |
4346 |
peter |
| GFF.cc |
173 |
114 |
19 |
40 |
3875 |
peter |
| GFF.h |
153 |
39 |
45 |
69 |
3114 |
peter |
| GFF2.cc |
58 |
27 |
18 |
13 |
4252 |
peter |
| GFF2.h |
45 |
13 |
16 |
16 |
3114 |
peter |
| GFF3.cc |
50 |
23 |
13 |
14 |
4252 |
peter |
| GFF3.h |
46 |
15 |
15 |
16 |
3114 |
peter |
| GenomicPosition.cc |
97 |
53 |
12 |
32 |
3999 |
peter |
| GenomicPosition.h |
145 |
27 |
57 |
61 |
3999 |
peter |
| Makefile |
20 |
1 |
13 |
6 |
2824 |
peter |
| Makefile.am |
75 |
55 |
13 |
7 |
4345 |
peter |
| Pileup.h |
442 |
211 |
92 |
139 |
4019 |
peter |
| VCF.cc |
758 |
563 |
27 |
168 |
4267 |
peter |
| VCF.h |
756 |
308 |
166 |
282 |
4316 |
peter |
| VcfCompare.cc |
82 |
48 |
12 |
22 |
3759 |
peter |
| VcfCompare.h |
73 |
21 |
25 |
27 |
4308 |
peter |
| VcfFile.cc |
148 |
88 |
22 |
38 |
4089 |
peter |
| VcfFile.h |
128 |
33 |
42 |
53 |
4207 |
peter |
| VcfHeader.cc |
357 |
274 |
12 |
71 |
4308 |
peter |
| VcfHeader.h |
207 |
54 |
68 |
85 |
3999 |
peter |
| VcfIterator.cc |
42 |
14 |
13 |
15 |
3774 |
peter |
| VcfIterator.h |
69 |
17 |
28 |
24 |
3774 |
peter |
| algorithm.h |
197 |
76 |
70 |
51 |
3999 |
peter |
| config_bam.h |
53 |
12 |
26 |
15 |
4346 |
peter |
| hts.cc |
248 |
135 |
59 |
54 |
4278 |
peter |
| phred.cc |
43 |
15 |
13 |
15 |
3325 |
peter |
| phred.h |
54 |
9 |
22 |
23 |
3326 |
peter |
| Total |
10249 |
4893 |
2165 |
3191 |
4346 |
peter |
![[plot]](../../../../../classic/images/code/yat/omic/index.png)