| ../ |
| BamFile.cc |
266 (100%) |
181 (100%) |
19 (100%) |
66 (100%) |
4359 |
peter |
| BamFile.h |
426 (100%) |
151 (100%) |
103 (100%) |
172 (100%) |
3999 |
peter |
| BamHeader.cc |
311 (100%) |
220 (100%) |
21 (100%) |
70 (100%) |
4359 |
peter |
| BamHeader.h |
316 (100%) |
73 (100%) |
102 (100%) |
141 (100%) |
4359 |
peter |
| BamPair.cc |
95 (100%) |
48 (100%) |
14 (100%) |
33 (100%) |
4089 |
peter |
| BamPair.h |
128 (100%) |
34 (100%) |
37 (100%) |
57 (100%) |
4089 |
peter |
| BamPairBuffer.h |
80 (100%) |
26 (100%) |
30 (100%) |
24 (100%) |
4057 |
peter |
| BamPairIterator.h |
247 (100%) |
130 (100%) |
57 (100%) |
60 (100%) |
4089 |
peter |
| BamPairIterator2.h |
275 (100%) |
154 (100%) |
55 (100%) |
66 (100%) |
4057 |
peter |
| BamRead.cc |
562 (100%) |
371 (100%) |
42 (100%) |
149 (100%) |
4359 |
peter |
| BamRead.h |
642 (100%) |
152 (100%) |
206 (100%) |
284 (100%) |
4359 |
peter |
| BamReadFilter.cc |
48 (100%) |
20 (100%) |
13 (100%) |
15 (100%) |
4359 |
peter |
| BamReadFilter.h |
87 (100%) |
26 (100%) |
36 (100%) |
25 (100%) |
4359 |
peter |
| BamReadIterator.cc |
242 (100%) |
159 (100%) |
18 (100%) |
65 (100%) |
4359 |
peter |
| BamReadIterator.h |
212 (100%) |
72 (100%) |
77 (100%) |
63 (100%) |
4359 |
peter |
| BamReadSequenceIterator.cc |
136 (100%) |
80 (100%) |
14 (100%) |
42 (100%) |
4345 |
peter |
| BamReadSequenceIterator.h |
126 (100%) |
48 (100%) |
33 (100%) |
45 (100%) |
4345 |
peter |
| BamRegion.cc |
70 (100%) |
33 (100%) |
13 (100%) |
24 (100%) |
4272 |
peter |
| BamRegion.h |
90 (100%) |
25 (100%) |
28 (100%) |
37 (100%) |
4275 |
peter |
| BamWriteIterator.cc |
61 (100%) |
25 (100%) |
13 (100%) |
23 (100%) |
3999 |
peter |
| BamWriteIterator.h |
111 (100%) |
30 (100%) |
40 (100%) |
41 (100%) |
4359 |
peter |
| Codon.cc |
244 (100%) |
195 (100%) |
13 (100%) |
36 (100%) |
4089 |
peter |
| Codon.h |
159 (100%) |
43 (100%) |
63 (100%) |
53 (100%) |
4359 |
peter |
| DNA.cc |
163 (100%) |
111 (100%) |
15 (100%) |
37 (100%) |
4245 |
peter |
| DNA.h |
172 (100%) |
31 (100%) |
76 (100%) |
65 (100%) |
4245 |
peter |
| DnaComplementer.cc |
53 (100%) |
27 (100%) |
13 (100%) |
13 (100%) |
4346 |
peter |
| DnaComplementer.h |
47 (100%) |
11 (100%) |
19 (100%) |
17 (100%) |
4346 |
peter |
| Fasta.cc |
193 (100%) |
128 (100%) |
22 (100%) |
43 (100%) |
4359 |
peter |
| Fasta.h |
167 (100%) |
44 (100%) |
54 (100%) |
69 (100%) |
4346 |
peter |
| GFF.cc |
173 (100%) |
114 (100%) |
19 (100%) |
40 (100%) |
3875 |
peter |
| GFF.h |
153 (100%) |
39 (100%) |
45 (100%) |
69 (100%) |
3114 |
peter |
| GFF2.cc |
58 (100%) |
27 (100%) |
18 (100%) |
13 (100%) |
4252 |
peter |
| GFF2.h |
45 (100%) |
13 (100%) |
16 (100%) |
16 (100%) |
4359 |
peter |
| GFF3.cc |
50 (100%) |
23 (100%) |
13 (100%) |
14 (100%) |
4252 |
peter |
| GFF3.h |
46 (100%) |
15 (100%) |
15 (100%) |
16 (100%) |
3114 |
peter |
| GenomicPosition.cc |
97 (100%) |
53 (100%) |
12 (100%) |
32 (100%) |
4359 |
peter |
| GenomicPosition.h |
145 (100%) |
27 (100%) |
57 (100%) |
61 (100%) |
4359 |
peter |
| Makefile |
20 (100%) |
1 (100%) |
13 (100%) |
6 (100%) |
2824 |
peter |
| Makefile.am |
75 (100%) |
55 (100%) |
13 (100%) |
7 (100%) |
4359 |
peter |
| Pileup.h |
442 (100%) |
211 (100%) |
92 (100%) |
139 (100%) |
4019 |
peter |
| VCF.cc |
757 (100%) |
563 (100%) |
26 (100%) |
168 (100%) |
4359 |
peter |
| VCF.h |
756 (100%) |
308 (100%) |
166 (100%) |
282 (100%) |
4316 |
peter |
| VcfCompare.cc |
82 (100%) |
48 (100%) |
12 (100%) |
22 (100%) |
3759 |
peter |
| VcfCompare.h |
73 (100%) |
21 (100%) |
25 (100%) |
27 (100%) |
4359 |
peter |
| VcfFile.cc |
148 (100%) |
88 (100%) |
22 (100%) |
38 (100%) |
4089 |
peter |
| VcfFile.h |
128 (100%) |
33 (100%) |
42 (100%) |
53 (100%) |
4207 |
peter |
| VcfHeader.cc |
357 (100%) |
274 (100%) |
12 (100%) |
71 (100%) |
4308 |
peter |
| VcfHeader.h |
207 (100%) |
54 (100%) |
68 (100%) |
85 (100%) |
3999 |
peter |
| VcfIterator.cc |
42 (100%) |
14 (100%) |
13 (100%) |
15 (100%) |
3774 |
peter |
| VcfIterator.h |
69 (100%) |
17 (100%) |
28 (100%) |
24 (100%) |
3774 |
peter |
| algorithm.h |
197 (100%) |
76 (100%) |
70 (100%) |
51 (100%) |
3999 |
peter |
| config_bam.h |
53 (100%) |
12 (100%) |
26 (100%) |
15 (100%) |
4346 |
peter |
| hts.cc |
248 (100%) |
135 (100%) |
59 (100%) |
54 (100%) |
4278 |
peter |
| phred.cc |
43 (100%) |
15 (100%) |
13 (100%) |
15 (100%) |
3325 |
peter |
| phred.h |
54 (100%) |
9 (100%) |
22 (100%) |
23 (100%) |
3326 |
peter |
| Total |
10247 (100%) |
4893 (100%) |
2163 (100%) |
3191 (100%) |
4359 |
peter |
![[plot]](../../../../../blame/images/empty/yat/omic/index.png)