yat  0.16pre
Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level 12345]
 Ctheplu::yat::statistics::averager_base< Averager >
 Ctheplu::yat::statistics::averager_base< Averager1 >
 Ctheplu::yat::statistics::averager_base< Averager3 >
 Ctheplu::yat::statistics::averager_base< Averager4 >
 Ctheplu::yat::utility::BasicMatrix< Matrix >
 Ctheplu::yat::utility::BasicMatrix< MatrixExpression< Derived > >
 Ctheplu::yat::utility::detail::BasicQueue< PriorityQueue< JobPtr, LowerPriority >, JobPtr, std::set< JobPtr, LowerPriority > >
 Ctheplu::yat::utility::detail::BasicQueue< PriorityQueue< T, Compare >, T, std::set< T, Compare > >
 Ctheplu::yat::utility::detail::BasicQueue< Queue< boost::exception_ptr >, boost::exception_ptr, std::deque< boost::exception_ptr > >
 Ctheplu::yat::utility::detail::BasicQueue< Queue< JobPtr >, JobPtr, std::deque< JobPtr > >
 Ctheplu::yat::utility::detail::BasicQueue< Queue< T >, T, std::deque< T > >
 Ctheplu::yat::utility::BasicVector< VectorBase >
 Ctheplu::yat::utility::BasicVector< VectorExpression< Derived > >
 CAssignable
 CCopyConstructible
 CDefaultConstructible
 CEqualityComparable
 Cfunction_output_iterator
 Citerator_adaptor
 Citerator_facade
 Cnoncopyable
 Coperators
 Ctheplu::yat::statistics::Distance< EuclideanDistance >
 Ctheplu::yat::utility::SegmentTree< std::map< Segment< T, Compare >, Tp, SegmentCompare< T, Compare > >, Compare, PairFirst< const std::pair< const Segment< T, Compare >, Tp > > >
 Ctheplu::yat::utility::SegmentTree< std::set< Segment< T, Compare >, SegmentCompare< T, Compare > >, Compare, Identity< const Segment< T, Compare > & > >
 Ctheplu::yat::utility::SmartPtr< const std::vector< size_t > >
 Cbinary_function
 Cistream_iterator
 Cruntime_error
 Cunary_function
 Ctheplu::yat::classifier::ConsensusInputRankerRobust algorithm to rank rows in a data matrix versus a target vector
 Ctheplu::yat::classifier::DataLookup1DClass for general vector view
 Ctheplu::yat::classifier::DataLookupWeighted1DClass for general weighted vector view
 Ctheplu::yat::classifier::EnsembleBuilder< Classifier, Data >Class for ensembles of supervised classifiers
 Ctheplu::yat::classifier::FeatureSelectorInterface class for FeatureSelection
 Ctheplu::yat::classifier::IGP< Distance >Class for In Group Proportions (IGP)
 Ctheplu::yat::classifier::InputRankerClass for ranking rows in a matrix, using a Score and a target vector
 Ctheplu::yat::classifier::IRRetrieveInterface class for retrieving information from a InputRanker to build a ConsensusInputRanker
 Ctheplu::yat::classifier::KernelInterface Class for Kernels
 Ctheplu::yat::classifier::KernelFunctionInterface class calculating elements in Kernel
 Ctheplu::yat::classifier::KernelLookupLookup into Kernel
 Ctheplu::yat::classifier::KNN_ReciprocalDistanceA model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample
 Ctheplu::yat::classifier::KNN_ReciprocalRankA model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample
 Ctheplu::yat::classifier::KNN_UniformA model of the concept Neighbor Weighting Method to be used with KNN to weight the votes of the k nearest neighbors of a sample
 Ctheplu::yat::classifier::MatrixLookupGeneral view into utility::Matrix
 Ctheplu::yat::classifier::MatrixLookupWeightedGeneral view into utility::MatrixWeighted
 Ctheplu::yat::classifier::PerceptronA Single-layer Perceptron
 Ctheplu::yat::classifier::SamplerInterface class for dividing samples into training and validation
 Ctheplu::yat::classifier::SubsetGenerator< Data >Class splitting Data into training and validation set
 Ctheplu::yat::classifier::SupervisedClassifierInterface class for supervised classifiers that use data in a matrix format
 Ctheplu::yat::classifier::SVindex
 Ctheplu::yat::classifier::SVMSupport Vector Machine
 Ctheplu::yat::classifier::SvmMultiClassSupport Vector Machine for more than two classes
 Ctheplu::yat::classifier::TargetClass for containing sample labels
 Ctheplu::yat::normalizer::Centralizer< UnaryFunction >Centralize a range
 Ctheplu::yat::normalizer::ColumnNormalizer< T >Using a functor T to normalize each column
 Ctheplu::yat::normalizer::GaussGaussian Normalizer
 Ctheplu::yat::normalizer::qQuantileNormalizerPerform Q-quantile normalization
 Ctheplu::yat::normalizer::QuantileNormalizerPerform quantile normalization
 Ctheplu::yat::normalizer::RowNormalizer< T >Using a functor T to normalize each column
 Ctheplu::yat::normalizer::SpearmanReplace elements with normalized rank
 Ctheplu::yat::normalizer::ZscoreZero mean and unity variance
 Ctheplu::yat::omic::BamHeaderWrapper around bam_hdr_t struct
 Ctheplu::yat::omic::BamPair
 Ctheplu::yat::omic::BamPairProxy
 Ctheplu::yat::omic::BamReadClass holding a bam query
 Ctheplu::yat::omic::Codon
 Ctheplu::yat::omic::DnaComplementerFunctor that calculates genomic complement
 Ctheplu::yat::omic::FastaWrapper class around struct faidx_t in libhts
 Ctheplu::yat::omic::Fasta::Sequence
 Ctheplu::yat::omic::GFF
 Ctheplu::yat::omic::Pileup< Iterator >
 Ctheplu::yat::omic::Pileup< Iterator >::Entry
 Ctheplu::yat::omic::VCF
 Ctheplu::yat::omic::VCF::DataClass holiding data stored in FORMAT and data fields
 Ctheplu::yat::omic::VCF::InfoClass handling the INFO field in an VCF entry
 Ctheplu::yat::omic::VcfCompare
 Ctheplu::yat::omic::VcfHeader
 Ctheplu::yat::random::ContinuousContinuous random number distributions
 Ctheplu::yat::random::DiscreteDiscrete random number distributions
 Ctheplu::yat::random::RNGRandom Number Generator
 Ctheplu::yat::random::RNG_stateClass holding state of a random generator
 Ctheplu::yat::regression::GSLInterpolationBase class for interfacing GSL interpolation
 Ctheplu::yat::regression::KernelInterface Class for calculating the weights in a more general way than classical rectangular windows
 Ctheplu::yat::regression::LocalClass for Locally weighted regression
 Ctheplu::yat::regression::MultiDimensionalWeightedMultiDimesional fitting
 Ctheplu::yat::regression::Multivariate
 Ctheplu::yat::regression::NegativeBinomial
 Ctheplu::yat::regression::OneDimensionalInterface Class for One Dimensional fitting
 Ctheplu::yat::regression::OneDimensionalWeightedInterface Class for One Dimensional fitting in a weighted fashion
 Ctheplu::yat::statistics::AverageFunctor to take average of a range
 Ctheplu::yat::statistics::averager< Iterator >
 Ctheplu::yat::statistics::averager_base< Derived >Base class for averager classes
 Ctheplu::yat::statistics::averager_pair< Iterator1, Iterator2 >
 Ctheplu::yat::statistics::averager_traits< T >
 Ctheplu::yat::statistics::averager_traits< utility::unweighted_iterator_tag >
 Ctheplu::yat::statistics::averager_traits< utility::weighted_iterator_tag >
 Ctheplu::yat::statistics::AveragerPairClass for taking care of mean and covariance of two variables
 Ctheplu::yat::statistics::AveragerPairWeightedClass for taking care of mean and covariance of two variables in a weighted manner
 Ctheplu::yat::statistics::AveragerWeightedClass to calulate averages with weights
 Ctheplu::yat::statistics::Chi2Chi squared test
 Ctheplu::yat::statistics::Distance< Derived >A convenience class to implement Distance
 Ctheplu::yat::statistics::FisherFisher's exact test
 Ctheplu::yat::statistics::GaussianMixtureData modelled as mixture of Gaussian distributions
 Ctheplu::yat::statistics::HistogramHistograms provide a convenient way of presenting the distribution of a set of data
 Ctheplu::yat::statistics::KendallKendall's tau rank coefficient
 Ctheplu::yat::statistics::KolmogorovSmirnovKolmogorov Smirnov Test
 Ctheplu::yat::statistics::KolmogorovSmirnov::Element
 Ctheplu::yat::statistics::KolmogorovSmirnovOneSampleKolmogorov Smirnov Test for one class
 Ctheplu::yat::statistics::LikelihoodRatioTestBinomialLikelihood-ratio test for binomial data
 Ctheplu::yat::statistics::PearsonCorrelationClass for calculating Pearson correlation
 Ctheplu::yat::statistics::PearsonDistanceCalculates the Pearson correlation distance between two points given by elements of ranges
 Ctheplu::yat::statistics::PercentilerFunctor to calculate percentile of a range
 Ctheplu::yat::statistics::ROCReciever Operating Characteristic
 Ctheplu::yat::statistics::ScoreInterface Class for score classes
 Ctheplu::yat::statistics::SmootherEstimating a distribution in a smooth fashion
 Ctheplu::yat::statistics::SpearmanSpearman rank correlation coefficient
 Ctheplu::yat::statistics::tTestClass for Student's t-test
 Ctheplu::yat::statistics::TukeyBiweightEstimatorTukey's Biweight Estimator
 Ctheplu::yat::statistics::VectorFunctionInterface Class for vector functors
 Ctheplu::yat::utility::AlignerAligning two sequences
 Ctheplu::yat::utility::Aligner::CigarCompact Idiosyncratic Gapped Alignment Report
 Ctheplu::yat::utility::BasicMatrix< Derived >
 Ctheplu::yat::utility::BasicStreamRedirect< charT, traits >Redirect a stream to another stream
 Ctheplu::yat::utility::BasicVector< Derived >
 Ctheplu::yat::utility::ColumnStream
 Ctheplu::yat::utility::CommandLineClass for parsing the command line
 Ctheplu::yat::utility::Container2D< T >Concept check for Container2D
 Ctheplu::yat::utility::DataIteratorConcept< T >Concept check for Data Iterator
 Ctheplu::yat::utility::DataWeightHolds a pair of data and associated weight
 Ctheplu::yat::utility::DataWeightProxy< DataIterator, WeightIterator >Proxy class for DataWeight
 Ctheplu::yat::utility::DeleterFunctor that deletes an object
 Ctheplu::yat::utility::detail::BasicQueue< Derived, T, Container >
 Ctheplu::yat::utility::detail::weighted_iterator::Traversal< DataIterator, WeightIterator >
 Ctheplu::yat::utility::DiagonalMatrixDiagonal Matrix
 Ctheplu::yat::utility::expression::Minus
 Ctheplu::yat::utility::expression::Multiplies
 Ctheplu::yat::utility::expression::Plus
 Ctheplu::yat::utility::FileUtilChecking file/directory existence and access permissions
 Ctheplu::yat::utility::IndexClass for storing indices of, e.g., a MatrixLookup
 Ctheplu::yat::utility::iterator_traits< Iter >
 Ctheplu::yat::utility::KernelMatrix< RandomAccessRange1, RandomAccessRange2, BinaryFunctor >A KernelMatrix is a Container2D
 Ctheplu::yat::utility::KernelPCAPrincipal Component Analysis on a Kernel Matrix
 Ctheplu::yat::utility::MatrixWeightedWeighted Matrix
 Ctheplu::yat::utility::NNIInterface class for nearest neighbour imputation (NNI) algorithms
 Ctheplu::yat::utility::OptionContainer of variables for an option
 Ctheplu::yat::utility::pair_value_compare< T1, T2 >Functor comparing pairs using second
 Ctheplu::yat::utility::PairFirst< Pair >Functor that return std::pair.first
 Ctheplu::yat::utility::PairSecond< Pair >Functor that return std::pair.second
 Ctheplu::yat::utility::PCAPrincipal Component Analysis
 Ctheplu::yat::utility::Range< T >A class for storing a shallow copy of a Range
 Ctheplu::yat::utility::SchedulerHandle a number of jobs and send them to threads
 Ctheplu::yat::utility::Scheduler::Job
 Ctheplu::yat::utility::Segment< T, Compare >Class for a Segment or Interval
 Ctheplu::yat::utility::SegmentTree< Container, Compare, Value2Key >Base Class for SegmentSet and SegmentMap
 Ctheplu::yat::utility::SmartPtr< T >
 Ctheplu::yat::utility::SmithWaterman
 Ctheplu::yat::utility::SVDSingular Value Decomposition
 Ctheplu::yat::utility::TypeInfoWrapper class for storing std::type_info
 Ctheplu::yat::utility::unweighted_iterator_tag
 Ctheplu::yat::utility::weighted_if_any2< T1, T2 >
 Ctheplu::yat::utility::weighted_if_any3< T1, T2, T3 >
 Ctheplu::yat::utility::weighted_iterator_tag
 Ctheplu::yat::utility::weighted_iterator_traits< Iterator >
 Ctheplu::yat::utility::WeightedIteratorArchetype_ctor_arg

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